Re: [gmx-users] pH and protein

2012-07-12 Thread Justin A. Lemkul
On 7/12/12 1:42 AM, tarak karmakar wrote: Dear All, I am simulating a protein in gromacs with amber force field. The protein shows maximum biological activity at pH 5.0 and at pH 7.4 it shows no activity. So whichever biological process I am going to model should be at the biologically active

[gmx-users] pH and protein

2012-07-11 Thread tarak karmakar
Dear All, I am simulating a protein in gromacs with amber force field. The protein shows maximum biological activity at pH 5.0 and at pH 7.4 it shows no activity. So whichever biological process I am going to model should be at the biologically active pH . So can anyone suggest me 1) how to get