Re: [gmx-users] pdb file of polymer

2012-06-29 Thread Parvez khan
thanx a lot Justin for reply Regards parvez On Fri, Jun 29, 2012 at 2:27 PM, Justin A. Lemkul wrote: > > > On 6/29/12 2:21 PM, Parvez khan wrote: >> >> Hi, I am trying to do polymer simulation with gromacs. I am new to >> gromacs and trying to construct topology for a system of polymer >> chains

Re: [gmx-users] pdb file of polymer

2012-06-29 Thread Justin A. Lemkul
On 6/29/12 2:21 PM, Parvez khan wrote: Hi, I am trying to do polymer simulation with gromacs. I am new to gromacs and trying to construct topology for a system of polymer chains. My problem is that i am facing difficulties to creat pdb file for polymer chain containing 1000 monomers. I have use

[gmx-users] pdb file of polymer

2012-06-29 Thread Parvez khan
Hi, I am trying to do polymer simulation with gromacs. I am new to gromacs and trying to construct topology for a system of polymer chains. My problem is that i am facing difficulties to creat pdb file for polymer chain containing 1000 monomers. I have used PRODRG server but it gives me a pdb and t