Re: [gmx-users] pdb2gmx Could not find force field, when using -ff commandline parameter

2011-06-23 Thread Justin A. Lemkul
Keith Callenberg wrote: Hello gmx-users, I wrote a script to perform a simulation on my Ubuntu 10.04 machine running Gromacs 4.0.7. At the beginning of the script I convert the system from pdb coordinates to gro using pdb2gmx. I am using the GROMOS 45a3 forcefield, specified by -ff G45a3 and i

[gmx-users] pdb2gmx Could not find force field, when using -ff commandline parameter

2011-06-23 Thread Keith Callenberg
Hello gmx-users, I wrote a script to perform a simulation on my Ubuntu 10.04 machine running Gromacs 4.0.7. At the beginning of the script I convert the system from pdb coordinates to gro using pdb2gmx. I am using the GROMOS 45a3 forcefield, specified by -ff G45a3 and it works great. pdb2gmx -f n