Hello,
I know that is an already know problem but I don't know how to move on.
running pdb2gmx I had this message
Fatal error:
Atom CG is used in an interaction of type atom in the topology
database, but an atom of that name was not found in residue
number 163.
Residue 163 is a GLY and has no a
On 10/05/2010 1:49 AM, Justin A. Lemkul wrote:
Moeed wrote:
Hello,
output.pdb2gmx is giving Fatal error:
Fatal error:
Residue '' not found in residue topology database. Do I need to add
Hexane topology to rtp file in library?! Please see below. Thank you
very much.
It looks
Moeed wrote:
Hello,
output.pdb2gmx is giving Fatal error:
Fatal error:
Residue '' not found in residue topology database. Do I need to add
Hexane topology to rtp file in library?! Please see below. Thank you
very much.
It looks like the format of your .pdb file is wrong. p
Hello,
output.pdb2gmx is giving Fatal error:
Fatal error:
Residue '' not found in residue topology database. Do I need to add Hexane
topology to rtp file in library?! Please see below. Thank you very much.
***
Dave Hassan wrote:
Hi,
I'm trying to run a simple simulation of a DNA hairpin pdb entry 1pqt.
When I run pdb2gmx with the G43a1 force field I get the error:
Warning: 'DG' not found in residue topology database, trying to use 'DGUA'
---
Pro
Hi,
I'm trying to run a simple simulation of a DNA hairpin pdb entry 1pqt.
When I run pdb2gmx with the G43a1 force field I get the error:
Warning: 'DG' not found in residue topology database, trying to use 'DGUA'
---
Program pdb2gmx, VERSION 4
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