An easy way to build a protein in a bilayer is through the charmm-gui
website
www.charmm-gui.org/
Partial drawbacks are that you need CHARMM to perform final equilibration
and then may need to rename some atoms to work with GROMACS
On plus side is that charmm36.ff retains the original CHARMM
Hi,
I would like to simulate protein in DMPC bilayer in Charmm36 ff.
I checked mailing list and KALP-15 tutorial, but still I have a few basic
questions.
1) I have problem with DMPC bilayer...
- VMD membrane builder only provides POPE and POPC lipids...
- on the Peter Tieleman page there is a
Tomek Wlodarski wrote:
Hi,
I would like to simulate protein in DMPC bilayer in Charmm36 ff.
I checked mailing list and KALP-15 tutorial, but still I have a few
basic questions.
1) I have problem with DMPC bilayer...
- VMD membrane builder only provides POPE and POPC lipids...
- on the
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