Re: [gmx-users] protein molecule fragmenting after addition of counter ions

jayant james wrote: Hi all! I am attempting to counter a charge of -13 in a simulation, where the protein is solvated in water. I use the genion option and choose to replace 13 solvent (water) atoms. Upon visualizing the genion output structure, I find that some atoms from three of the eight

[gmx-users] protein molecule fragmenting after addition of counter ions

Hi all! I am attempting to counter a charge of -13 in a simulation, where the protein is solvated in water. I use the genion option and choose to replace 13 solvent (water) atoms. Upon visualizing the genion output structure, I find that some atoms from three of the eight cys ( a Hydrogen and two