On 6/10/2011 3:52 PM, shahid nayeem wrote:
Dear All
I want to refine a protein homology model, I did minimization but then
procheck does not give better Ramachandran plot.
EM can only do a local minimization, and there is no good reason why
that should show a marked improvement on an
Dear All
I am trying to refine a protein model which is a homodimer with each chain
having 609 residues.I tried minimizing in Chimera and then checking models
with procheck.Infact model quality deteriorated as far as Ramachandran plot
is concerned. Will doing MD simulation help me in Gromacs. It
Dear All
I want to refine a protein homology model, I did minimization but then
procheck does not give better Ramachandran plot. This model is a homodimer
with each chain of 609 residue and a total of 1218 residue so a long MD
simulation to search native state is not feasible. Can any one help me
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