Re: [gmx-users] Re: Extending the simulation

2011-02-11 Thread Justin A. Lemkul
bharat gupta wrote: Ya I found that the new trajectory is saved with name traj.trr and traj.xtc ... and I remember I saved the new tpr file as next.tpr.. Now I want to merge the two trajectories and the two .tpr files... I found trjcat can be used ... I used the following command: - trjcat

Re: [gmx-users] Re: Extending the simulation

2011-02-11 Thread bharat gupta
Ya I found that the new trajectory is saved with name traj.trr and traj.xtc ... and I remember I saved the new tpr file as next.tpr.. Now I want to merge the two trajectories and the two .tpr files... I found trjcat can be used ... I used the following command: - trjcat -f1 md_0_1.xtc -f2 traj.xt

Re: [gmx-users] Re: Extending the simulation

2011-02-11 Thread Mark Abraham
On 11/02/2011 8:10 PM, bharat gupta wrote: Hi, I extended by 3ns simulation by 2 more ns ... i.e total 5 ns but the .xtc file shows only the 3ns trajectories and after checking the md.log file , its showing that it completed those 2 ns steps also... then how can I get the trajectory for those

[gmx-users] Re: Extending the simulation

2011-02-11 Thread bharat gupta
Hi, I extended by 3ns simulation by 2 more ns ... i.e total 5 ns but the .xtc file shows only the 3ns trajectories and after checking the md.log file , its showing that it completed those 2 ns steps also... then how can I get the trajectory for those 2ns ... I used the following commands for exten

[gmx-users] re: extending the simulation

2011-02-10 Thread bharat gupta
Hi, I extended by 3ns simulation by 2 more ns ... i.e total 5 ns but the .xtc file shows only the 3ns trajectories and after checking the md.log file , its showing that it completed those 2 ns steps also... then how can I get the trajectory for those 2ns ... I used the following commands for exten