Re: [gmx-users] using VMD with GROMACS trajectories

2007-05-16 Thread Erik Lindahl
Hi Mark, David was installing a new server - as soon as I get an IP for it I'll enter it in the gromacs DNS and we can put a wiki online :-) David - any update? Cheers, Erik On May 16, 2007, at 10:51 AM, Mark Abraham wrote: Mark Abraham wrote: Roughly speaking, a gromacs .top file has t

Re: [gmx-users] using VMD with GROMACS trajectories

2007-05-16 Thread Mark Abraham
Mark Abraham wrote: Roughly speaking, a gromacs .top file has the same sort of information as a .psf file, but VMD won't read one natively. Instead, give VMD a structure file (.gro, .g96, .pdb or anything else) that corresponds (in the same order) to the atoms that are saved in your trajectory

[gmx-users] using VMD with GROMACS trajectories

2007-05-16 Thread Mark Abraham
sichuan xu wrote: Dear Mark and other friends£¬ In future, please change the subject of the email to something relevant, to improve your chances of getting a useful answer and avoid wasting people's time and effort. I am a new user of Gromacs. I can obtain .xtc, .top, and .log files. But t