Also important to ask is:
What was your APL *before* you inserted the protein? Was it realistic to
begin with? If not, then start your problem solving there...
On 2012-08-19 06:16:48PM +0200, Albert wrote:
> Dear All:
>
> I am using GridMAT-MD to calculate the area/lipid for my POPC system.
>
On 8/19/12 2:32 PM, Albert wrote:
hello Justin:
thank you very much for kind reply.
My protein is so large (300 aa and 7 transmembrane helix) and it will
definitely affect the lipids property. In this case, how can we know that the
forcefield is good enough for protein/lipids modeling e
hello Justin:
thank you very much for kind reply.
My protein is so large (300 aa and 7 transmembrane helix) and it will
definitely affect the lipids property. In this case, how can we know
that the forcefield is good enough for protein/lipids modeling even
people did lots microsecond simu
On 8/19/12 12:16 PM, Albert wrote:
Dear All:
I am using GridMAT-MD to calculate the area/lipid for my POPC system. The
whole system was consist of a 300aa protein, 116 POPC and 0.15M NaCl.
1. I calculate the area/lipids by GridMAT-MD with the protein in it and I got a
value:
Ave APL = 54.
Dear All:
I am using GridMAT-MD to calculate the area/lipid for my POPC system.
The whole system was consist of a 300aa protein, 116 POPC and 0.15M NaCl.
1. I calculate the area/lipids by GridMAT-MD with the protein in it and
I got a value:
Ave APL = 54.1013569676733 sq. Ang
2. I removed
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