[gmx-users] walls combining with the PME and pressure coupling

Dear all, I have sent this e-mail to the gmx-users mailing list for a few days, but without any reply until now. I'm not sure if it has something to do with the format, because the link can’t be opened when I search the mailing list. So this time I use the plain text and send it once more,

[gmx-users] walls

Dear Gromacs users, May I ask you to help me about use of walls in martini coarse-grained, please? I defined two walls for my system as following: pbc        = xy         nwall  = 2 wall_type    = 12_6 wall_r_linpot    = 1 wall_atomtype = W  W I

[gmx-users] walls in martini

Dear Prof. I want to use walls (in z=0 and z=z_box) for my simulation with martini coarse-grained force field, but always it give me error! Do the martini force field support walls? Should I use just 12-6 for wall_type? May I ask your help about this, Please? Best regards Sara-- gmx-users

[gmx-users] Walls user defined potential

Hi gmx-users and developers, I met a strange error when using wall function combined with user defined potential. Following is a part of the mdp: vdw-type = user energygrps = Surf SOL ; WALLS

RE: [gmx-users] Walls table-based potentials

for GROMACS users gmx-users@gromacs.org To: gmx-users@gromacs.org Subject: [gmx-users] Walls table-based potentials Date: Fri, 1 Jun 2007 11:35:10 -0500 Hello everyone, I am trying to use the new walls feature in the CVS version of gromacs. My system is a simple box of SPC water. When using

[gmx-users] Walls table-based potentials

Hello everyone, I am trying to use the new walls feature in the CVS version of gromacs. My system is a simple box of SPC water. When using wall_type: 9-3 or wall_type: 10-4 with appropriate atomtype and density parameters, I have no problems, and the runs proceed normally. However, when I try