RE: [gmx-users] Stimulation stopped at 2ns

2013-07-09 Thread Florian Dommert
> -Original Message- > From: gmx-users-boun...@gromacs.org [mailto:gmx-users- > boun...@gromacs.org] On Behalf Of Nuno Azoia > Sent: Monday, July 08, 2013 11:21 PM > To: Discussion list for GROMACS users > Subject: Re: [gmx-users] Stimulation stopped at 2ns > &

Re: [gmx-users] Stimulation stopped at 2ns

2013-07-08 Thread Nuno Azoia
On 8 July 2013 22:12, Justin Lemkul wrote: > > > On 7/8/13 5:08 PM, Rama Krishna Koppisetti wrote: > >> Thanks Justin for your reply, >> >> I found something like this, in .log file,nsteps=100 but in .mdp file >> > > Then you're not using the .mdp file you think you are and the run is only >

Re: [gmx-users] Stimulation stopped at 2ns

2013-07-08 Thread Justin Lemkul
On 7/8/13 5:08 PM, Rama Krishna Koppisetti wrote: Thanks Justin for your reply, I found something like this, in .log file,nsteps=100 but in .mdp file Then you're not using the .mdp file you think you are and the run is only scheduled for 2 ns. it is nsteps=500. I don't see any st

Re: [gmx-users] Stimulation stopped at 2ns

2013-07-08 Thread Rama Krishna Koppisetti
Thanks Justin for your reply, I found something like this, in .log file,nsteps=100 but in .mdp file it is nsteps=500. I don't see any stdout and stderr files. ___ On Mon, Jul 8, 2013 at 3:50 PM, Justin Lemkul wrote: > > > On 7/8/13 4:3

Re: [gmx-users] Stimulation stopped at 2ns

2013-07-08 Thread Justin Lemkul
On 7/8/13 4:33 PM, Rama wrote: Dear All, I'm trying to do long stimulation run but every time it stops at 2ns, below pasted .mdp file parameters. How to run 10ns or more ns stimulation run? Do I need to change any parameters in .mdp file or else where. There is nothing in the .mdp file that