Re: [gmx-users] protein in membrane

2011-07-30 Thread Justin A. Lemkul
Sweta Iyer wrote: Hi, I used the inflategro.pl script to insert my protein into the membrane and scaled down the lipids until it reached the recommended area per lipid value. After removing 4 lipid molecules, I started with an area of 90 square angstrom and reached a value of 65 square angstro

Re: [gmx-users] protein in membrane

2011-07-30 Thread wibke . sudholt
Dear Email Sender, Thank you very much for contacting me! Unfortunately, I am not available in the office at the moment and cannot respond to your email. I will be able to handle your request starting again Thursday, August 4, 2011. For all questions about CloudBroker and the CloudBroker Platfo

RE: [gmx-users] protein in membrane

2007-10-03 Thread Itamar Kass
Shalom, The easy way is to remove lipids such that a hole in the membrane will form, put your protein in in run. Or you can try the protocol in Faraldo-Gomez, J. D., Smith, G. R., and Sansom, M. S. (2002) "Setting up and optimization of membrane protein simulations. European Biophysics Journa