Re: [gmx-users] pull code problem: between protofilaments

Dear Chris, Thank a lot for your reply. I am trying the pull code that you have suggested. And I would be more specific about the problem and code in my future mails. regards, Shilpi On 02/10/11, chris.ne...@utoronto.ca wrote: > Dear Shilpi: > > Can you use something like this? > > pull 

RE: [gmx-users] pull code problem

Hi, First, please switch to 4.0.5, I have put several fixes in the pull code in the 4.0 minor releases. You did not specify pull_init1, nor pull_start, this means you start pulling at a distance of 0, which means the center of the bilayer. Setting pull_start = yes should fix your problem. Berk

RE: [gmx-users] pull code problem

Hi, Maybe there is an older grompp in your path. Type grompp -h to see which version you are using. And: which grompp to see where it comes from. Berk > Date: Mon, 11 May 2009 13:03:07 +0300 > From: neamtuand...@gmail.com > To: gmx-users@gromacs.org > Subject: [gmx-users] pull code problem > >

RE: [gmx-users] pull code problem

Hi, Do you have another line with "pull =" somewhere in your mdp file? PS You should switch to Gromacs 4.0.4, since it contains several small bug fixes for the pull code. Berk > Date: Mon, 11 May 2009 12:38:35 +0300 > From: neamtuand...@gmail.com > To: gmx-users@gromacs.org > Subject: [gmx-use