009 14:08:48 +0200
> From: ilona.bal...@bioquant.uni-heidelberg.de
> To: gmx-users@gromacs.org
> Subject: RE: [gmx-users] pullx.xvg Meaning of output?
>
> What is meant by absolute reference? Can it be the Origin (0, 0, 0).
> Does it assume a random reference point for t
facts.
Berk
Date: Thu, 25 Jun 2009 11:02:41 +0200
From: ilona.bal...@bioquant.uni-heidelberg.de
To: g...@hotmail.com
Subject: RE: [gmx-users] pullx.xvg Meaning of output?
Hi Berk,
I am trying to unfold a protein by stretching/pulling it from both
sides in Z (and -Z) direction. To this end,
rk
> Date: Tue, 23 Jun 2009 14:39:48 +0200
> From: ilona.bal...@bioquant.uni-heidelberg.de
> To: gmx-users@gromacs.org
> Subject: RE: [gmx-users] pullx.xvg Meaning of output?
>
>
> Dear Berk,
>
> Thanks for the quick reply. That leads me to my next questions:
>
Dear Berk,
Thanks for the quick reply. That leads me to my next questions:
*I used the whole N and C residues for pulling. Is there any way of
reconstructing the values for the single atoms? Or do you recommend
only to pull N and C in the first place?
*What does the reference group actually
Hi,
This is actually not (yet) documented.
0Z is the Z-coordinate of group 0.
1dZ is the the Z-coordinate of group 1 minus the one of group 0.
Berk
> Date: Tue, 23 Jun 2009 12:54:37 +0200
> From: ilona.bal...@bioquant.uni-heidelberg.de
> To: gmx-users@gromacs.org
> Subject: [gmx-users] pullx.xv
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