Re: [gmx-users] the position_restraints

2009-04-15 Thread XAvier Periole
, April 14, 2009 3:06 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] the position_restraints He, Yang wrote: HI all users, I want to define the position_restraints in the itp file but when I run it, it always show that Segmentation fault (core dumped) You'll have to do b

Re: [gmx-users] the position_restraints

2009-04-14 Thread Mark Abraham
He, Yang wrote: HI all users, I want to define the position_restraints in the itp file but when I run it, it always show that Segmentation fault (core dumped) That could well be true, but it's vanishingly rare for GROMACS not to have written something else descriptive about the crash to std

Re: [gmx-users] the position_restraints

2009-04-14 Thread Justin A. Lemkul
PM To: Gromacs Users' List Subject: Re: [gmx-users] the position_restraints He, Yang wrote: HI Justin, I just use the mdrun command and then get such error. Before that, I did not get other messages just go on well expect when I use the mdrun. Also, when I did not use the position_rest

RE: [gmx-users] the position_restraints

2009-04-14 Thread He, Yang
From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] On Behalf > Of Justin A. Lemkul [jalem...@vt.edu] > Sent: Tuesday, April 14, 2009 3:06 PM > To: Discussion list for GROMACS users > Subject: Re: [gmx-users] the position_restraints > > He, Yang wrote: >> HI

Re: [gmx-users] the position_restraints

2009-04-14 Thread Justin A. Lemkul
...@gromacs.org] On Behalf Of Justin A. Lemkul [jalem...@vt.edu] Sent: Tuesday, April 14, 2009 3:06 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] the position_restraints He, Yang wrote: HI all users, I want to define the position_restraints in the itp file but when I run it, it always

RE: [gmx-users] the position_restraints

2009-04-14 Thread He, Yang
-users] the position_restraints He, Yang wrote: > HI all users, > > I want to define the position_restraints in the itp file but when I run it, > it always show that > > Segmentation fault (core dumped) > You'll have to do better than "run it" - what do you me

Re: [gmx-users] the position_restraints

2009-04-14 Thread Justin A. Lemkul
He, Yang wrote: HI all users, I want to define the position_restraints in the itp file but when I run it, it always show that Segmentation fault (core dumped) You'll have to do better than "run it" - what do you mean, grompp? mdrun? As written, your position restraints look OK, so I don'