He, Yang wrote:
Hi Mark,
I just choose a small number of steps but it also does not work.it always shows
that
starting mdrun 'MODEL CYLINDER'
1 steps,300.0 ps.
Segmentation fault (core dumped)
OK, so that's a generic error message suggesting something is severely
wrong. Check the e
gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] On Behalf
Of Mark Abraham [mark.abra...@anu.edu.au]
Sent: Friday, January 23, 2009 12:53 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
> I just tried it seve
He, Yang wrote:
I just tried it several times and still can not get the trajectory file. I am
using the 3.3.1 not new version but I can get the xtc or trr file when running
the other cases .
It seems unlikely you were able to run a million-step integration
several times to completion. Choose
Behalf
Of Justin A. Lemkul [jalem...@vt.edu]
Sent: Friday, January 23, 2009 12:09 PM
To: Gromacs Users' List
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
> yes, I mean that when using the command "mdrun", the traj.xtc file is not
> ouput at all
-boun...@gromacs.org [gmx-users-boun...@gromacs.org] On Behalf
Of Justin A. Lemkul [jalem...@vt.edu]
Sent: Friday, January 23, 2009 11:55 AM
To: Gromacs Users' List
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
I think this problem is not due to the disk spa
-boun...@gromacs.org [gmx-users-boun...@gromacs.org] On Behalf
Of Justin A. Lemkul [jalem...@vt.edu]
Sent: Friday, January 23, 2009 11:55 AM
To: Gromacs Users' List
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
> I think this problem is not due to the disk spa
[jalem...@vt.edu]
Sent: Friday, January 23, 2009 11:42 AM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
Hi all the users,
When I use the command "mdrun"to simulate the CG DNA model, I found that all
the files
: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] On Behalf
Of Justin A. Lemkul [jalem...@vt.edu]
Sent: Friday, January 23, 2009 11:42 AM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] why the trajectory file is not output
He, Yang wrote:
> Hi all the users,
>
He, Yang wrote:
Hi all the users,
When I use the command "mdrun"to simulate the CG DNA model, I found that all
the files are output expect the trajectory file. I will list some parts of my mdp.file
During the simulation? Data is buffered, so you may not see immediate output.
Or is the
9 matches
Mail list logo
