Re: [gmx-users] How to use Inflategro with different lipid types

2011-05-01 Thread Justin A. Lemkul
Ioannis Beis wrote: Dear gromacs users, I am a new user of gromacs. I am currently trying to build a large bilayer with 3 different lipid species (11 DPPC : 7 POPC : 7 POPE) and no protein embedded in it. I have used single lipids from pre-equilibrated bilayers available at Mr. Tieleman's

Re: [gmx-users] How to use Inflategro with different lipid types

2011-05-01 Thread Thomas Piggot
Hi, To construct the bilayer I would just take an equilibrated POPC bilayer and then randomly pick lipids to change to POPE (just by a simple renaming of these lipids and the atom names in the headgroup) and DPPC (which would just require deletion of two united-atoms from the sn-2 chains and