On 11/9/13 5:24 AM, rajat desikan wrote:
Hi All,
I have a few older membrane simulations for which the COM for the upper and
lower leaflets were not removed in the course of the simulations. These are
pretty long simulations exceeding 300 ns.
I have trouble with post-processing of the
Hi Justin,
1) I am doing all three. -type x, -type y, -lateral z (xy) ...(I am looking
at anisotropy in dynamics if any)
2) Yes, 192 phosphate beads is exact. I have 384 lipids in my system
(192/leaflet)
If you were to remove the COM motion of individual leaflets and extract the
MSD, what would
On 11/9/13 11:37 AM, rajat desikan wrote:
Hi Justin,
1) I am doing all three. -type x, -type y, -lateral z (xy) ...(I am looking
at anisotropy in dynamics if any)
2) Yes, 192 phosphate beads is exact. I have 384 lipids in my system
(192/leaflet)
If you were to remove the COM motion of
Hi Justin,
Thanks for your time. I think I will use g_traj to spit out the P8
coordinates from upperP8_center_pbcnojump.xtc and write my own little MSD
routine :)
On Sat, Nov 9, 2013 at 11:36 PM, Justin Lemkul jalem...@vt.edu wrote:
On 11/9/13 11:37 AM, rajat desikan wrote:
Hi Justin,
1)
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