Re: Re : Re : [gmx-users] Re: Adding Ions

2011-07-13 Thread Justin A. Lemkul
or GROMACS users *Envoyé le :* Mercredi 13 Juillet 2011 14h42 *Objet :* Re: Re : [gmx-users] Re: Adding Ions errabah fatima ezzahra wrote: > > *I am trying to do a Short position restrained simulation so i wrote * grompp -f pr.mdp -c system.gro -p file.top -o file.tpr , i added the N

Re : Re : [gmx-users] Re: Adding Ions

2011-07-13 Thread errabah fatima ezzahra
Objet : Re: Re : [gmx-users] Re: Adding Ions errabah fatima ezzahra wrote: > > *I am trying to do a Short position restrained simulation so i wrote * grompp > -f pr.mdp -c system.gro -p file.top -o file.tpr , i added the NA+ to the > pr.mdp file > here the p

Re: Re : Re : [gmx-users] Re: Adding Ions

2011-07-13 Thread Justin A. Lemkul
r they're not showing up in some visualization software? -Justin *De :* Justin A. Lemkul *À :* Discussion list for GROMACS users *Envoyé le :* Mercredi 13 Juillet 2011 14h42 *Objet :* Re: Re : [gmx-users] Re: Adding

Re : Re : [gmx-users] Re: Adding Ions

2011-07-13 Thread errabah fatima ezzahra
?? De : Justin A. Lemkul À : Discussion list for GROMACS users Envoyé le : Mercredi 13 Juillet 2011 14h42 Objet : Re: Re : [gmx-users] Re: Adding Ions errabah fatima ezzahra wrote: > > *I am trying to do a Short position restrained simulation so i wrote * grompp

Re: Re : [gmx-users] Re: Adding Ions

2011-07-13 Thread Justin A. Lemkul
errabah fatima ezzahra wrote: *I am trying to do a Short position restrained simulation so i wrote * grompp -f pr.mdp -c system.gro -p file.top -o file.tpr , i added the NA+ to the pr.mdp file here the pr.mdp tc-grps = Protein WNA+ First of all, you should never do this.