Re: [gmx-users] Gromacs query for vaccum medium

2011-11-04 Thread Anushree Tripathi
I have seen different articles on MD simulation in vaccum but i didn't get the exact way for it.If u can tell me the exact way then i can proceed for it fastly because I have to do it within certain time limit. On Thu, Nov 3, 2011 at 11:43 PM, Mark Abraham mark.abra...@anu.edu.auwrote: On

Re: [gmx-users] Gromacs query for vaccum medium

2011-11-04 Thread Justin A. Lemkul
Anushree Tripathi wrote: I have seen different articles on MD simulation in vaccum but i didn't get the exact way for it.If u can tell me the exact way then i can proceed for it fastly because I have to do it within certain time limit. It would be useful if you were to describe what it is

[gmx-users] Gromacs query for vaccum medium

2011-11-03 Thread Anushree Tripathi
Let me know how to simulate a membrane protein in vaccum medium by using gromacs commands.What are the basic differences in commands as well as parameters used in liquid and vaccum medium? Please guide me. -- gmx-users mailing listgmx-users@gromacs.org

Re: [gmx-users] Gromacs query for vaccum medium

2011-11-03 Thread Mark Abraham
On 4/11/2011 4:58 AM, Anushree Tripathi wrote: Let me know how to simulate a membrane protein in vaccum medium by using gromacs commands.What are the basic differences in commands as well as parameters used in liquid and vaccum medium? Please guide me. I suggest you do all the GROMACS