gpc-dev 21 Mar agenda and meeting notes

2017-03-20 Thread Dan Connolly
What else for tomorrow? * ​21 Mar gpc-dev shared notes scribe: MU 1. Convene, take roll, review records and plan next meeting(s) * 11:00am Central Time.

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread Debbie Yoshihara
Ok, here is how I count 11 1) RX_BASIS DI 2) RX_BASIS PR 3) RX_BASIS AD 4) RX_DAYS_SUPPLY 5) RX_FREQ 6) RX_QUANTITY 7) RX_REFILLS 8) RX_STRENGTH 9) RX_ROUTE 10) RX_DOSE 11) RX_DETAIL I guess you're counting the RX_BASIS as 1 instead of 3. --- Debbie Yoshihara -Original Message- From:

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread Phillip Reeder
The explosion of the number of facts has been my biggest concern with the med modifiers as well. With 115 million medication rows, a 10x increase would give us double our existing number of facts. At UTSW, I¹ve populated the data for many of these modifiers into the observation_blob column in a

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread Dan Connolly
As to who is going to look at them: i2p-transform (i.e. software to build PCORNet CDM from i2b2) consumes these modifiers. As to 11x: how many modifiers are you currently storing? You're already storing RX_BASIS, RX_FREQUENCY, RX_DAYS_SUPPLY, RX_QUANTITY, and RX_REFILLS somehow, yes? UNMC was

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread Debbie Yoshihara
I have looked over these explosion of modifiers. For the med modifiers if you populated all of them that would make the facts 11x bigger for the med facts. Who is going to look at all of these? Or even populate them if they have them? The only other question I have is for the lab_mod, what is

Re: [gpc-informatics] #580: Data Characterization - Cycle 2, Refresh 2 Tracking

2017-03-20 Thread GPC Informatics
#580: Data Characterization - Cycle 2, Refresh 2 Tracking ---+- Reporter: lv | Owner: nsmith Type: problem| Status: assigned Priority: major | Milestone: cdm-cycle3 Component: data-stds |

RE: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread Thomas Mish
I don't think so. -TM -Original Message- From: GPC Informatics [mailto:d...@madmode.com] Sent: Monday, March 20, 2017 8:46 AM To: Thomas Mish ; campb...@unmc.edu; huhick...@nebraskamed.com; dconno...@kumc.edu; rwait...@kumc.edu Cc: gpc-dev@listserv.kumc.edu;

Re: [gpc-informatics] #280: Medication ontology orgainzed by ingredient

2017-03-20 Thread GPC Informatics
#280: Medication ontology orgainzed by ingredient -+ Reporter: preeder | Owner: mish Type: enhancement | Status: assigned Priority: major| Milestone: snow-shrine-2 Component: data-stds| Resolution: