RE: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-30 Thread Klann, Jeffrey G.
raham; campb...@unmc.edu > Subject: RE: [gpc-informatics] #109: mapping to PCORI CDM (aka mini- > sentinel data model) > > Hi Men, > > I think the next step is to have these decisions reality tested with a > true set of demo data that could be realistically ETL'd into i2

RE: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-12 Thread Murphy, Shawn N.
in word.split('_')) >'HumptyDumpty' > >Did you add spaces back in manually? > >More on steps b, c, and d separately... > > >-- >Dan > > >From: Klann, Jeffrey G. [jeff.kl...@mgh.harvard.edu] >Sent: Mond

Re: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-11 Thread Klann, Jeffrey G.
t;From: Klann, Jeffrey G. [jeff.kl...@mgh.harvard.edu] >Sent: Monday, June 09, 2014 10:23 PM >To: gpc-dev@listserv.kumc.edu; Russ Waitman; Dan Connolly >Cc: Matthew Hoag; Nathan Graham; campb...@unmc.edu; Murphy, Shawn N. >Subject: Re: [gpc-informatics] #109: mapping to PCORI CDM (aka >mini

RE: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-10 Thread Dan Connolly
ck in manually? More on steps b, c, and d separately... -- Dan From: Klann, Jeffrey G. [jeff.kl...@mgh.harvard.edu] Sent: Monday, June 09, 2014 10:23 PM To: gpc-dev@listserv.kumc.edu; Russ Waitman; Dan Connolly Cc: Matthew Hoag; Nathan Graham; campb...@un

Re: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-09 Thread Klann, Jeffrey G.
Hi Dan, Some comments: On A - I agree, we¹re nearing a workable ontology. Per our discussion today, I gather that query compatibility across our networks is of utmost importance. So we need to synchronize our fullnames and basecodes in the PCORnet ontology. I started looking at differences betwee

Re: [gpc-informatics] #109: mapping to PCORI CDM (aka mini-sentinel data model)

2014-06-05 Thread Klann, Jeffrey G.
> > BUG: Modifiers get the same table name and column name as concepts. > > I don't understand that one. I'll have to follow up for details. i2b2 is flexible, but generally for modifiers the c_tablename column is ŒMODIFIER_DIMENSION¹ and the c_columname is Œmodifier_path¹. > > > BUG: Need to rem