What else for tomorrow? * 21 Mar gpc-dev shared notes<https://docs.google.com/document/d/17Vx3k5JjQFULfSRWDZPVaCCmXwZXGffMW4XXK9uWLcs/edit> scribe: MU
________________________________ 1. Convene, take roll, review records and plan next meeting(s) * 11:00am Central Time. Meeting ID and access code: 817-393-381<https://global.gotomeeting.com/meeting/join/817393381>; call +1 (571) 317-3131 * roll: all 12 DevTeams<https://informatics.gpcnetwork.org/trac/Project/wiki/DevTeams> represented? KUMC, CMH, UIOWA, WISC, MCW, MCRF, UMN, UNMC, UTHSCSA, UTSW, MU, IU Reminder - put institution after your name in GoToMeeting preferences * today's scribe: MU * comments on the agenda? On last week’s notes? (#12<https://informatics.gpcnetwork.org/trac/Project/ticket/12>) Recent tickets opened/closed<https://informatics.gpcnetwork.org/trac/Project/timeline> - FYI (i.e. not intended for discussion) * none * Next Meetings: Note LRU scribe schedule in #12<https://informatics.gpcnetwork.org/trac/Project/ticket/12#comment:92> * 28 Mar: Dan at AMIA. Cancel? Recruit chair? * 4 Apr scribe: UTHSCSA? * Integrating hospital billing: UHC ETL scripts<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003668.html> - preferred date to discuss? 2. Milestone:grouse-research-1<https://informatics.gpcnetwork.org/trac/Project/milestone/grouse-research-1> * #564 (Crosswalk files from 6 sites back from GDIT) closed<https://informatics.gpcnetwork.org/trac/Project/ticket/564#comment:7> fixed! Overlap between CMS data and KUMC finder file: ~1.4M 3. Milestone:cdm-cycle3<https://informatics.gpcnetwork.org/trac/Project/milestone/cdm-cycle3> checkpoint ~3 Apr * #580<https://informatics.gpcnetwork.org/trac/Project/ticket/580> Data Characterization - Cycle 2, Refresh 2 Tracking<https://informatics.gpcnetwork.org/trac/Project/ticket/580>: Here's a list of themes received by one or more sites: 1 Incorrect CDM version in HARVEST table. Update to 3.0. WISC 2 Incorrect DATAMART_NAME in HARVEST table. Marshfield, Regenstrief Indiana, KUMC, UTHSCSA 3 the % of encounters without a principal diagnosis was calculated incorrectly in the EDC report/will be below 10% threshold. Marshfield, UNMC, Regenstrief Indiana, UTHSCSA 4 Future Dates - enrollment end date (July 2016) after refresh date (June 2016) Iowa 5 ICD9 diagnosis codes do not appear to be valid codes KUMC 6 ICD10 diagnosis codes do not appear to be valid codes Regenstrief/Indiana?<https://informatics.gpcnetwork.org/trac/Project/wiki/Regenstrief/Indiana>, UTHSCSA (100%), Either Missouri or Minnesota (message sent to T.Meyer, but datamart referenced was C4UMO not C4UMA) 7 Data coded as ICD9 after the ICD9/10 transition dates in the Diagnosis and Procedures tables. Iowa 8 Orphan Encounter IDs - if the encounter appears on a data record, it's expected to exist in the Encounter table Iowa 9 Dispensing records in DataMart_All, but nothing in Dispensing DC Iowa * CDM V3.X PROCEDURES <http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003720.html>JRC: during DRNOC discussions, it became clear that how the procedures tables is populated varies widely between datamarts - 12x in some cases. Labs were deemed relevant to be coded as procedures. What is appropriate for GPC to fall under the procedure tables? Discussion continued after the scheduled time; it wasn’t entirely conclusive. * interoperable procedure order ontology by looking at link between orders and billing transactions?<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003731.html> Russ Waitman 1. Milestone:snow-shrine-1<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-1> due 20 Mar * #460<https://informatics.gpcnetwork.org/trac/Project/ticket/460> SNOW SHRINE node at UTSW <https://informatics.gpcnetwork.org/trac/Project/ticket/460>SNOW Shrine Ontologies<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003718.html> Phillip Reeder Thu Mar 9 * Update shrine-1 milestone ETA? I.e. leading sites (WISC, UTSW, MCRF, IU) operational 2. Milestone:snow-shrine-2<https://informatics.gpcnetwork.org/trac/Project/milestone/snow-shrine-2> due ~Apr * #280<https://informatics.gpcnetwork.org/trac/Project/ticket/280>, MEDICATIONS metadata for SCILHS * UNMC will install SCILHS metadata into Babel. * Note Russ/KUMC March 15 feedback comment:16<https://informatics.gpcnetwork.org/trac/Project/ticket/280#comment:16> * JRC to solicit input Marsolo and company from the national antibiotics study https://github.com/CDMFORUM/CDM-GUIDANCE/issues * Tom/Debbie/WISC review<http://listserv.kumc.edu/pipermail/gpc-dev/2017q1/003741.html> * Status at shrine-2 sites: * KUMC #567<https://informatics.gpcnetwork.org/trac/Project/ticket/567>: we’re making steady progress on install/configure/network (e.g. 9 Mar comment:8); a bit behind on ontology mapping; still aiming for 30 Apr, but perhaps only demographics and diagnoses * CMH #586<https://informatics.gpcnetwork.org/trac/Project/ticket/586>: at-risk as of 7 Mar * IU (see shrine-1 above) * UIOWA - ? * WISC (see shrine-1 above) * MCW - ? * MCRF (see shrine-1 above) * UMN #461<https://informatics.gpcnetwork.org/trac/Project/ticket/461> - updates since HackathonThree<https://informatics.gpcnetwork.org/trac/Project/wiki/HackathonThree> Jan 2016? * MU - ? * UNMC #532<https://informatics.gpcnetwork.org/trac/Project/ticket/532> - needed WISC help with networking 10 Mar * UTHSCSA - ? * UTSW (see shrine-1 above) 3. Milestone:cohort-char-bc-db<https://informatics.gpcnetwork.org/trac/Project/milestone/cohort-char-bc-db> due 13 Mar * #584<https://informatics.gpcnetwork.org/trac/Project/ticket/584> Possible blended registry record<https://informatics.gpcnetwork.org/trac/Project/ticket/584> (WISC) * 13 Mar update: “honest broker will verify and import the data into GPC REDCap” * #358<https://informatics.gpcnetwork.org/trac/Project/ticket/358> NAACCR ETL: update all sites to include summary of treatment etc. <https://informatics.gpcnetwork.org/trac/Project/ticket/358>News from Jay / UNMC since 24 Oct? ________________________________ -- Dan
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