[gmx-users] (no subject)

2018-01-24 Thread حلیمه میرسالاری
Dear all l am using gromacs 4.5.5 version for simulation carbon nanotubes with charmm27 force feild ,there was no error grompp stage,but when l do simulation of carbon nanotube in tip3p water encountered with fatal error: [ file tip3p.itp, line 40]: Atom index (1) in settles out of bounds (1

[gmx-users] How to solve this fatal error?

2018-01-23 Thread حلیمه میرسالاری
Dear all l am using gromacs 4.5.5 version for simulation carbon nanotubes with charmm27 force feild ,there was no error grompp stage,but when l do simulation of carbon nanotube in tip3p water encountered with fatal error: [ file tip3p.itp, line 40]: Atom index (1) in settles out of bounds (1

Re: [gmx-users] How to solve this fatal error?

2018-01-20 Thread حلیمه میرسالاری
Hi order of element? 2018-01-20 15:59 GMT-08:00 Mark Abraham : > Hi, > > Like the message says, you have mishandled the order of the elements of > your topology. Look at the examples in the documentation. > > Mark > > On Sun, Jan 21, 2018, 00:40 حلیمه میرسالاری

[gmx-users] How to solve this fatal error?

2018-01-20 Thread حلیمه میرسالاری
Dear all l am using gromacs 4.5.5 version for simulation carbon nanotubes in tip3p water with charmm27 force feild. I used grompp for energy minmization,but l encountered with fatal error: [ file tip3p.itp, line 40]: Atom index (1) in settles out of bounds (1-0). This probably means that you h