Dear all:
Has anyone succeeded in installing the command g_correlation in GROMACS
4.5.5?
File obtained from http://www.mpibpc.mpg.de/grubmueller/g_correlation
I tried installing but I keep getting the error message seen below.
*6/include -I/usr/local/gromacs/bin/include/gromacs -c -o g_correlatio
>>>>>>>>>>>>>>>
Wei-Hsiang Weng (翁偉翔), Master
Department of Life Sciences
Tzu-Chi University, Taiwan
0975-232-245 (C)
E-mail: weiweng...@gmail.com
104726...@gms.tcu.edu.tw
2015-12-10 16:45 GMT+08:00 Kutzner, Carsten :
> Hi,
>
> > On 10 D
Dear all:
I'm using the generalized correlation analysis tool developed by Lange and
Grubmüller. Does anyone know the option for setting the range of
correlation values? Say, 0 to 1?
Any advice would be appreciated, thanks in advance.
Best,
Wei-Hsiang
--
Wei-Hsiang Weng (翁偉翔)
Department of Life
what formalism to work in (correlation
> coefficient vs. MI value). Any filtering of values is a matter of
> post-processing.
>
> Take care,
> Samuel Bowerman
> Ph.D. Candidate
> Illinois Institute of Technology
> On Jan 25, 2016 9:14 PM, "Felix W.-H. Weng" wrote:
>
Dear all:
I'm trying to calculate kinks within alpha helices using gmx bundle. I
specify 4 Ca atoms from the helix top, bottom and kink separately in the
index file. And, I've used the option -na 1. But I keep getting the results
shown below.
@title "Kink angles"
@xaxis label "Time (ps)"
Dear all:
I'm trying to use g_densmap to analyze densities of water, but the result
seems to be blurry due to relative motion (?). Does anyone have any
suggestions on how to solve this problem?
Thanks in advance. Happy holidays!
Best,
Wei-Hsiang
--
Wei-Hsiang Weng (翁偉翔)
Department of Life Scie