[gmx-users] Joining two simulation box into a big box

2018-08-28 Thread Joydeep Munshi
you and hope to get some answers. *Thanks and regards,* *Joydeep Munshi,* *Graduate Research Assistant,* *Packard Lab 375,* *Mechanical Engineering and Mechanics,* *Lehigh University* *Contact: (484)-821-6702* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org

[gmx-users] gmx insert-molecule issue- not getting the number atoms inserted wanted

2018-02-15 Thread Joydeep Munshi
more. Is there any way to get this done efficiently to insert more atoms to the system? Is there any option to insert molecules using parallel processing. Thanks in advance. *Thanks and regards,* *Joydeep Munshi,* *Graduate Research Assistant,* *Packard Lab 375,* *Mechanical Engineering and

[gmx-users] GROMACS-GPU enabled installation error

2018-01-06 Thread Joydeep Munshi
ed* *make[2]: *** [src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/cuda_tools/libgromacs_generated_copyrite_gpu.cu.o] Error 1* *CMakeFiles/Makefile2:1291: recipe for target 'src/gromacs/CMakeFiles/libgromacs.dir/all' failed* *make[1]: *** [src/gromacs/CMakeFiles/libgromacs.dir/all] Error 2* *Ma

[gmx-users] Memory allocation error in HPC

2017-09-28 Thread Joydeep Munshi
KT_EAGER_SEND* *[sol-b411:mpi_rank_47][handle_cqe] ../mvapich2-2.1/src/mpid/ch3/channels/mrail/src/gen2/ibv_channel_manager.c:587: [] Got completion with error 12, vendor code=0x81, dest rank=27* Thanks in advance, Hoping suggestions on the resolution. *Thanks and regards,* *Joydeep Munshi,* *Gr