Re: [gmx-users] Error when performing MD with heavy atoms frozen

2017-06-16 Thread Kai Hu
That is good to know, thanks! Can you also tell me if it is possible and how to include FE atom in the system? Sorry for those many questions. --Kai On Fri, Jun 16, 2017 at 1:20 PM, Justin Lemkul wrote: > > > On 6/16/17 9:34 AM, Kai Hu wrote: > >> Thanks for the fast r

Re: [gmx-users] Error when performing MD with heavy atoms frozen

2017-06-16 Thread Kai Hu
, succussfully simulate system with ligand. Can u tell me how to model in iron and these water? I would like iron and water oxygens to be frozen at their original positions. Looking forward to your reply! -Kai On Fri, Jun 16, 2017 at 7:19 AM Justin Lemkul wrote: > > > On 6/15/17 11:57 A

[gmx-users] Error when performing MD with heavy atoms frozen

2017-06-15 Thread Kai Hu
these two commands in md.mdp file, no error would pop up, it seems something must wrong with the freeze commands. Thanks in advance for any help! --Kai -- Kai Hu Ph.D. candidate, Allen's lab, W240-MSC the Pennsylvania State University +1-814-777-8651 *"When God closes a door, he alwa