Re: [gmx-users] Tutorial 2: KALP-15 in DPPC

2016-06-20 Thread Kyle Titus-Glover
Sure, I can gather up the files and send them in a compressed folder to you school email if that's ok. Kyle Titus-Glover On Mon, Jun 20, 2016 at 3:45 PM, Justin Lemkul wrote: > > > On 6/20/16 3:11 PM, Kyle Titus-Glover wrote: > >> However, I did look into system_shrin

Re: [gmx-users] Tutorial 2: KALP-15 in DPPC

2016-06-20 Thread Kyle Titus-Glover
However, I did look into system_shrink1.gro and saw that the file was missing the peptides and that 2 DPPC molecules still remained undeleted. Should I manually correct the coordinate file? On Mon, Jun 20, 2016 at 3:09 PM, Kyle Titus-Glover wrote: > I tried restarting the whole process to

Re: [gmx-users] Tutorial 2: KALP-15 in DPPC

2016-06-20 Thread Kyle Titus-Glover
I tried restarting the whole process to go back and carefully look and make sure that nothing was spelled right. Bu I still get the same error. On Mon, Jun 20, 2016 at 2:36 PM, Justin Lemkul wrote: > > > On 6/20/16 2:32 PM, Kyle Titus-Glover wrote: > >> Hey everyone, >>

[gmx-users] Tutorial 2: KALP-15 in DPPC

2016-06-20 Thread Kyle Titus-Glover
ing for overlap ...this might actually take a while 100 % done... There are 2 lipids within cut-off range... 1 will be removed from the upper leaflet... 1 will be removed from the lower leaflet... But for some reason I can't seem to start the EM iterations because of this error. Si

[gmx-users] Tutorial 2: KALP-15 in DPPC

2016-06-20 Thread Kyle Titus-Glover
ing for overlap ...this might actually take a while 100 % done... There are 2 lipids within cut-off range... 1 will be removed from the upper leaflet... 1 will be removed from the lower leaflet... But for some reason I can't seem to start the EM iterations because of this error. Si