Re: [gmx-users] Replica exchange MD analysis

2019-03-25 Thread Rituraj Purohit
Thank you Justin, with your valuable input I got the solution. regards RajP On Mon, Mar 25, 2019 at 11:44 PM Justin Lemkul wrote: > > > > On 3/25/19 2:22 PM, Rituraj Purohit wrote: > > Thank you Mark for the reply. In my REMD results I would like to > > observe

Re: [gmx-users] Replica exchange MD analysis

2019-03-25 Thread Rituraj Purohit
This is the same as for any other scientific experiment. You need to have > thought about what you hope to learn and what you need to record in order > to analyse the results. REMD is essentially no different here. > > Mark > > On Sun., 24 Mar. 2019, 10:51 Rituraj Purohit, > wrote

[gmx-users] Replica exchange MD analysis

2019-03-24 Thread Rituraj Purohit
Dear Friends, I performed REMD by following tutorial provided by Mark Abraham, But I am not able to get the analysis part. Is a step-wise tutorial available ? I would be thankful to you if anyone of you could help me to perform analysis of REMD output. Thanking you Regards RajP -- Gromacs Users

[gmx-users] Replica exchange MD analysis

2019-03-19 Thread Rituraj Purohit
Dear Friends, I performed REMD by following tutorial provided by Mark Abraham, But I am not able to get the analysis part. Is a step-wise tutorial available ? I would be thankful to you if anyone of you could help me to perform analysis of REMD output. Thanking you Regards RajP -- Gromacs Users

[gmx-users] Replica exchange MD analysis

2019-03-16 Thread Rituraj Purohit
Dear Friends, I performed REMD by following tutorial provided by Mark Abraham, But I am not able to get the analysis part. Is a step-wise tutorial available ? I would be thankful to you if anyone of you could help me to perform analysis of REMD output. Thanking you Regards RajP -- Gromacs Users

[gmx-users] Calculate potential as function of time

2019-01-20 Thread Rituraj Purohit
Hi Friends, How to get a "graph of potential as function of time" ?? Currently I am using gmx potential script to generate potential.xvg but it is showing potential as function of boxlength. reg Rituraj -- Gromacs Users mailing list * Please search the archive at

[gmx-users] g_hbonds calculation on GPU

2017-08-09 Thread Rituraj Purohit
Hi Everyone, I would like to run g_hbons calculation on GPU boards. I could only find --nthreads option to fasten my calculations, Is it possible to use GPU boards for this like mdrun. reg Rraj -- Gromacs Users mailing list * Please search the archive at