Re: [gmx-users] Potential energy calculations

2013-12-23 Thread Robert Darkins
The potential energy of what exactly? The energy of bringing the atoms together to form a single DMSO molecule? If so then MD isn't appropriate for this type of calculation... On 24/12/13 00:33, virk wrote: Dear Users, I am try to simulate DMSO molecules. I am getting potential energy

Re: [gmx-users] Implicit solvation: nonpolar term?

2013-12-19 Thread Robert Darkins
On 19/12/13 23:31, Justin Lemkul wrote: On 12/19/13 6:14 PM, rdwducl wrote: Thanks for the reply Justin but I'm confused. Why must the atoms be bonded? Ultimately I plan to model micellisation whereby surfactants, which only interact with each other via non-bonded terms, are driven to