[gmx-users] Ruuning MD simulation on laptop

2019-11-04 Thread Swapnil Bhujbal
iated. Thank you in advance. Sincerely, Mr. Swapnil Bhujbal PhD Scholar, School of Medicine, Chosun University, South Korea. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.g

[gmx-users] Force field error

2019-03-04 Thread Swapnil Bhujbal
residue topology database* Please help me to solve this problem. Thank you in advance. Sincerely, Mr. Swapnil Bhujbal PhD Scholar, School of Medicine, Chosun University, South Korea. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-

[gmx-users] Fwd: Phosphorylated serine and threonine residues (Gromacs MD)

2019-02-11 Thread Swapnil Bhujbal
serine and threonine before MD preparations? Or shoild I ignore them because they will not be involved in any interactions with the ligand? Or do we have different force fields for the phosphorylated residues ? Your suggestions are highly appreciated. Thank you. Sincerely, Mr. Swapnil Bhujbal PhD

[gmx-users] Phosphorylated serine and threonine residues (Gromacs MD)

2019-02-11 Thread Swapnil Bhujbal
serine and threonine before MD preparations? Or shoild I ignore them because they will not be involved in any interactions with the ligand? Or do we have different force fields for the phosphorylated residues ? Your suggestions are highly appreciated. Thank you. Sincerely, Mr. Swapnil Bhujbal PhD