[gmx-users] Brownian Dynamics

2014-04-21 Thread Yutian Yang
Dear all, I noticed that Gromacs has the option to do Brownian Dynamics, is there anyone who has done that or where can I find any tutorials that can teach me to do it? Thanks. Sincerely Yutian (Shirley) Yang Biomedical and Chemical Engineering 329 Link Hall Syracuse University Syracuse NY 1

[gmx-users] energy components in g_energy

2014-04-09 Thread Yutian Yang
Dear all, I have a single polymer chain system and I need to calculate its interaction with the solvent. When I use the g_energy, I get the short range LJ for different energy components, as shown in below: Statistics over 58001 steps [ 10. through 300. ps ], 12 data sets A