Re: [gmx-users] g_hbond not running

2014-12-17 Thread antoni borysik
> look and maybe debug? > > Erik > > On 17 Dec 2014, at 09:10, antoni borysik wrote: > > > > > Hi Erik - yes tried that and no luck. g_hbond runs well with with some > > simulation but not others. Can't figure it out, or why no-one has come

Re: [gmx-users] g_hbond not running

2014-12-17 Thread antoni borysik
arch Fellow, Fulford JRF > > Department of Chemistry > Physical & Theoretical Chemistry Laboratory > University of Oxford > South Parks Road > Oxford > OX1 3QZ > > On 16 Dec 2014, at 14:11, antoni borysik > mailto:bory...@hotmail.co.uk>> > wrote: &g

[gmx-users] g_hbond not running

2014-12-16 Thread antoni borysik
Hi, have run various vacuum simulations with GROMACS 4.6.7. I find I can calculate h-bonds using g_hbond -f md.trr -s md.tpr on some simulations just fine while on others the system freezes 'Frame loop parallelized with OpenMP using 32 threads' even after leaving > 12 hours there is no progress