Re: [gmx-users] Conversion Amber to Gromacs

2017-10-20 Thread p.kartheek
- P. Kartheek, PhD Candidate, Computational Biophysical Chemistry, Center for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Marimuthu Krishan Group, 9701577399, karthee...@research.iiit.ac.in, On Fri, Oct 20, 20

Re: [gmx-users] Conversion Amber to Gromacs

2017-10-20 Thread p.kartheek
You can do with ParmEd On Oct 20, 2017 10:07 PM, "Elisa Pieri" wrote: > Hello GMX users/developers, > > we are trying to add the Amber lipids17 forcefield to the Amber99 > forcefield implemented in Gromacs. We are a little bit lost on the torsion > parameters: how to convert the constant from Amb

[gmx-users] Fwd: Using amber-ff14SB forcefield port to GROMACS - blowing up error

2017-06-12 Thread p.kartheek
Dear experts, Currently I am trying to model Protein-DNA complex systems, with updated Amber forcefield parameters. Parmbsc1 for DNA and *ff14SB* for protein, considering the unavailability of theses updated forcefield ports within gromacs, I have managed to generate the topologies through tleap mo