Re: [gmx-users] viscosity using green kubo relation for ionic liquids

2016-01-12 Thread shanmuga sundaram
I tried with g_energy -vis , but it calculates using einstein relation. I want to calculate using green kubo equation. regards, shanu On Tue, Jan 12, 2016 at 12:42 AM, David van der Spoel <sp...@xray.bmc.uu.se> wrote: > On 11/01/16 22:54, shanmuga sundaram wrote: > >> Hello

[gmx-users] viscosity using green kubo relation for ionic liquids

2016-01-11 Thread shanmuga sundaram
Hello all, I am trying to find viscosity using green kubo relation for Ionic Liquids. I got pressure tensor values (pxx, pyy, pzz, ….) from energy file .edr. How to get stress autocorrelation function (SACF) from pressure autocorrelation function in MD simulations? Also how to change ACF windows

[gmx-users] ionic liquids - viscosity using green kubo relation

2016-01-08 Thread shanmuga sundaram
Hello all, I am trying to find viscosity using green kubo relation for Ionic Liquids. I got pressure tensor values (pxx, pyy, pzz, ….) from energy file .edr. How to get stress autocorrelation function (SACF) from pressure autocorrelation function in MD simulations? Also how to change ACF windows