[gmx-users] mail regarding installation of geomacs5.1.2

2016-10-06 Thread subramanian vidhyasankar
Dear mark and justin sir Thank you for your previous reply I installed successfully the gromacs5.1.2 But my bin directory does not contain any executable files *it contains tool gmx_d only* When i run the following command *./gmx_d g_select_d -h* i got

[gmx-users] mail about g_select tool

2016-10-04 Thread subramanian vidhyasankar
Dear mark sir and Justin sir Thank you for your previous reply *I need to extract protein and sol molecule within 10 Amstrong of protein.* is it possible to use *g_select tool to get output either in .trr or .xtc form* if not possible which tool may i

[gmx-users] mail about installation og gromacs 4.6.1

2016-10-01 Thread subramanian vidhyasankar
Respected justin Thank you for your previous reply I would like to install gromacs 4.6.1 single precession for some reason when i use the following command cmake .. -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs it sucessfully configures But when i* complile using

[gmx-users] mail about KT value in gromacs

2016-08-05 Thread subramanian vidhyasankar
Dear justin thank you for your previous reply I need to set Kt (energy) value yo analyze trr file My simulation temperature is 323K May i use value of *0.008314*323* With regards S.Vidhyasankar -- Gromacs Users mailing list * Please search the archive at