Re: [gmx-users] Problem with g_chi options

2014-08-03 Thread Florian Sittel
Hi! I've just encountered exactly the same problem. I have a trajectory from another group and a .pdb-file with the reference structure. From the pdb I generated a tpr file, however g_chi finishes with these infos: '57 residues with dihedrals found 276 dihedrals found Reading frame 1514000

Re: [gmx-users] Problem with g_chi options

2014-07-14 Thread Anna Stopka
Hi! Thanks for your reply Justin! I have tried using a tpr file instead of a gro file, but that makes no difference. I still have the same problem! Does anybody have another idea? Thanks in advance! Anna On 07/09/2014 07:24 PM, Justin Lemkul wrote: On 7/9/14, 5:51 AM, Anna Stopka wrote: H

Re: [gmx-users] Problem with g_chi options

2014-07-09 Thread Justin Lemkul
On 7/9/14, 5:51 AM, Anna Stopka wrote: Hi everybody, I wrote last week, but nobody answered. So I write again, still having the same problem: I want do an analysis of my simulation with the tool g_chi. The problem is, that the optional output options don't work. I use the following command:

[gmx-users] Problem with g_chi options

2014-07-09 Thread Anna Stopka
Hi everybody, I wrote last week, but nobody answered. So I write again, still having the same problem: I want do an analysis of my simulation with the tool g_chi. The problem is, that the optional output options don't work. I use the following command: g_chi -s config.gro -f traj.xtc -oh -all

[gmx-users] Problem with g_chi options

2014-07-02 Thread Anna Stopka
Hi, I want do an analysis of my simulation with the tool g_chi. The problem is, that the optional output options don't work. I use the following command: g_chi -s config.gro -f traj.xtc -oh -all and all I get are the standard output files chi.log and order.xvg. I am not sure if it has somethin