Re: [gmx-users] A list of missing interactions

2020-01-16 Thread Alessandra Villa
Hi, my suggestion is to follow the indication that you got from the error See the mdrun " option -rdd, for pairs and tabulated bonds also see option -ddcheck" Best regards Alessandra On Wed, Jan 15, 2020 at 12:33 AM Sadaf Rani wrote: > Dear Gromacs users > I am facing this error during free en

[gmx-users] A list of missing interactions

2020-01-14 Thread Sadaf Rani
Dear Gromacs users I am facing this error during free energy calculation of protein-ligand for which I have applied restrained to some atoms of protein residue and ligand. A list of missing interactions: Restraint Pot. of 1 missing 1 Molecule type 'Protein' the first 10 missing int