Dear Gromacs users,
I am working with membrane proteins. I have build my membrane-protein
systems with a layer of water bed on top and bottom of the membrane. Now,
I would like to add a specific concentration of KCl to bottom layer of the
water bed. Can anybody suggest me a way to add ions to a
Hi,
Dunno, never tried the walls code.
Mark
On Thu, Jul 2, 2015 at 11:37 PM João Martins joaomartins...@gmail.com
wrote:
As a completely pointless point since Mark just explained why it doesn't
make much sense to do it, you can achieve the same by separating your
waters in the [ molecules ]
Hi,
Your membrane is probably in the x-y plane, so you just insert ions
everywhere and delete from the .gro file all that have a z coordinate
bigger than whatever value aligns with the bottom of your membrane, and
correct the number of atoms in the .gro and .top file accordingly.
This won't help
