Hi all,
I have a PDB file containing two proteins. One of the proteins has a long
stretch of missing residues. When I try to energy-minimize it, I get the
following:
WARNING: Listed nonbonded interaction between particles 2897 and 2908
at distance 3f which is larger than the table limit 3f nm.
Hi,
Yes, see pdbgmx -h about merge. Probably you want -merge interactive
-chainsep id
Mark
On Thu, Aug 20, 2015 at 8:39 PM Jorge Fernandez de Cossio Diaz
cos...@cim.sld.cu wrote:
Hi all,
I have a PDB file containing two proteins. One of the proteins has a long
stretch of missing residues.
@maillist.sys.kth.se
gromacs.org_gmx-users@maillist.sys.kth.se
Subject: Re: [gmx-users] Broken protein chain: WARNING: Listed
nonbonded interaction between particles ...
Message-ID:
CAMNuMARXoFeT_HN0J57y2pt=gzatnzgb+11asgpm6dxvyq3...@mail.gmail.com
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, gromacs.org_gmx-users@maillist.sys.kth.se
gromacs.org_gmx-users@maillist.sys.kth.se
Subject: Re: [gmx-users] Broken protein chain: WARNING: Listed
nonbonded interaction between particles ...
Message-ID:
CAMNuMARXoFeT_HN0J57y2pt=gzatnzgb+11asgpm6dxvyq3...@mail.gmail.com
