[gmx-users] Choose index group from terminal input.

2015-09-17 Thread Dawid das
Dear Gromacs Experts, Let's say that for some reasons I don't want to specify the atom group when g_rms (or other module) prompts me to do so. So I do not want to see this: Select group for RMSD calculation Group 0 ( System) has 38387 elements Group 1 (Protein) has 3470 e

Re: [gmx-users] Choose index group from terminal input.

2015-09-17 Thread Dawid das
O'right, I have figured that out myself. Just use text file like data.txt with two lines: 1 1 and redirect it: g_rms [options] < data.txt 2015-09-17 11:32 GMT+01:00 Dawid das : > Dear Gromacs Experts, > > Let's say that for some reasons I don't want to specify the atom group > when g_rms (or oth

Re: [gmx-users] Choose index group from terminal input.

2015-09-17 Thread Mark Abraham
Hi, Yes. Further options at http://www.gromacs.org/Documentation/How-tos/Using_Commands_in_Scripts Mark On Thu, Sep 17, 2015 at 1:04 PM Dawid das wrote: > O'right, I have figured that out myself. Just use text file like data.txt > with two lines: > 1 > 1 > > and redirect it: g_rms [options] <

Re: [gmx-users] Choose index group from terminal input.

2015-09-17 Thread Dawid das
Thank you. 2015-09-17 12:37 GMT+01:00 Mark Abraham : > Hi, > > Yes. Further options at > http://www.gromacs.org/Documentation/How-tos/Using_Commands_in_Scripts > > Mark > > On Thu, Sep 17, 2015 at 1:04 PM Dawid das wrote: > > > O'right, I have figured that out myself. Just use text file like dat