Re: [gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code

2017-03-26 Thread Sajeewa Pemasinghe
Thank you very much. I really appreciate your help. On Sun, Mar 26, 2017 at 6:16 PM, Justin Lemkul wrote: > > > On 3/24/17 1:54 PM, Sajeewa Pemasinghe wrote: > >> Hi, >> >> I have two molecules which are not moving in the z axis due to being >> continuous across the periodic

Re: [gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code

2017-03-26 Thread Justin Lemkul
On 3/24/17 1:54 PM, Sajeewa Pemasinghe wrote: Hi, I have two molecules which are not moving in the z axis due to being continuous across the periodic boxes. I want to keep the distance between them fixed by pulling along x and y axes. So as I am pulling along x and y axes does my ncoords = 2

[gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code

2017-03-24 Thread Sajeewa Pemasinghe
Hi, I have two molecules which are not moving in the z axis due to being continuous across the periodic boxes. I want to keep the distance between them fixed by pulling along x and y axes. So as I am pulling along x and y axes does my ncoords = 2 ? By going along with this logic as long as my