Are there any tutorial or tips to use cluster in Gromacs?
I have 5 nodes with 9 cores each node and want use all them in one simulation,
is that possible?
I've read something about gromacs MPI but I don't know how to use.
Can someone suggest some text or some tutorial for me?
Thanks in advance
What network do you have? Unless it's fast (that is low latency) you
won't be able to run across nodes. Are you sure about 9 cores, that
number seems strange?
--
Szilárd
On Mon, Apr 13, 2015 at 11:52 PM, Lucas Dadalt Morero wrote:
> Are there any tutorial or tips to use cluster in Gromacs?
> I h
Sorry, it's 8 cores. Network is good. The hardware setup is ok, I just want to
know how to perform a gromacs simulation using all the nodes..
Lucas
> Date: Tue, 14 Apr 2015 02:06:49 +0200
> From: pall.szil...@gmail.com
> To: gmx-us...@gromacs.org
> Subject: Re: [gmx-users] C
you check out that following page:
http://www.gromacs.org/Documentation/Acceleration_and_parallelization
--
Szilárd
>
>
> Lucas
>
>> Date: Tue, 14 Apr 2015 02:06:49 +0200
>> From: pall.szil...@gmail.com
>> To: gmx-us...@gromacs.org
>> Subject: Re: [gmx-users]
015 16:14:18 +0200
> From: pall.szil...@gmail.com
> To: gmx-us...@gromacs.org
> Subject: Re: [gmx-users] Clusters
>
> On Tue, Apr 14, 2015 at 2:45 AM, Lucas Dadalt Morero
> wrote:
> > Sorry, it's 8 cores. Network is good.
>
> Good for what? I was hoping t
