Hi Justin,
Thanks a lot for your reply.
I do think about that, but i forgot to mention that i’ve ran simulation in the
presence of POPC getting values of Could-SR, but the think is that i forgot
that POPC posees both, a positive and a negative charge, so even been a
‘neutral’ molecule, is able t
On 3/26/15 4:04 PM, Carlos Navarro Retamal wrote:
Hi,
Just to update.
I tried to run a CG simulation having a mixture membrane composed by
SQDG-MGDG-DGDG
and looking at the end of the .log file i found this:
Epot (kJ/mol)Coul-SR
Protein-Protein -9.54302e+01
Protein-SQDG -3.4
Hi,
Just to update.
I tried to run a CG simulation having a mixture membrane composed by
SQDG-MGDG-DGDG
and looking at the end of the .log file i found this:
Epot (kJ/mol)Coul-SR
Protein-Protein -9.54302e+01
Protein-SQDG -3.40735e+00
Protein-DGDG0.0e+00
Protein-MGDG
Dear gromacs users,
I’m studying the interaction between protein and several mixture lipids
(POPC-MGDG, POPC-DGDG, POPC-SQDG).
All simulations ran successfully.
Analysing the energy componentes during the simulations i noticed that when i
calculated the Coul-SR energy componen Between the protein
