Hi,
On 02/02/15 10:18, Erik Marklund wrote:
On 2 Feb 2015, at 01:53, Jernej Zidar
mailto:jernej.zi...@gmail.com>> wrote:
Hi everyone!
I would like to study a DNA-protein complex. The protein part is
composed of aminoacids covalently attached to the DNA bases. Which
force field would you rec
On 2 Feb 2015, at 01:53, Jernej Zidar
mailto:jernej.zi...@gmail.com>> wrote:
Hi everyone!
I would like to study a DNA-protein complex. The protein part is
composed of aminoacids covalently attached to the DNA bases. Which
force field would you recommend? Based on recent experience I was
thinki
Hi Jernej
I'll choose AMBER or CHARMM, because these two forcefields
have a more reliable description of nucleic acids. In my experience,
OPLS-aa and GROMOS do not seem to be able to produce stable
simulations in the large time scale for nucleic acids systems.
Best regards
Paulo Netz
2015-02-0
Hi everyone!
I would like to study a DNA-protein complex. The protein part is
composed of aminoacids covalently attached to the DNA bases. Which
force field would you recommend? Based on recent experience I was
thinking of using either OPLS-aa or CHARMM. OPLS-aa would be the
prefered choice becau
