Re: [gmx-users] Expanded ensemble error

2016-04-30 Thread Michael Shirts
If you are doing solvation in water, I would suggest not bothering with expanded ensemble. I would just use standard molecular dynamics at a range of lambda values. We have some information that it can be useful with binding problems, but with solvation alone, you are probably just fine running a

[gmx-users] Expanded ensemble error

2016-04-30 Thread Marzieh Saeedi Masineh
Dear Gromacs users, I wanted to use expanded ensemble for calculating solvation free energy of a drug molecule in the water based on "Ethanol solvation with expanded ensemble in gromacs". in this example the integrator, t coupl, pcoupl, and constraint-algorithm were set to md-vv, Nose-Hoover, M