Re: [gmx-users] Flip a bilayer

2018-02-16 Thread Justin Lemkul
On 2/15/18 12:38 PM, Poncho Arvayo Zatarain wrote: Hello Gromacs users: I have a problem with a lipid bilayer, when i watch in vmd, is inverted, the water is in the middle and the lipid tails are outside. How can i flip it to a correct way? I´m trying with gmx trjconv -f file.gro -s

[gmx-users] Flip a bilayer

2018-02-15 Thread Poncho Arvayo Zatarain
Hello Gromacs users: I have a problem with a lipid bilayer, when i watch in vmd, is inverted, the water is in the middle and the lipid tails are outside. How can i flip it to a correct way? I´m trying with gmx trjconv -f file.gro -s file.tpr -n index -o file.gro -pbc whole but nothing happens.