[gmx-users] Fw: minimization for final configuration

2014-09-30 Thread Mahboobeh Eslami
dear Justin thanks for your replyThe plot of the RMSD against time for the  trajectory generated with g_rms shows a maximum RMSD about 0.195 nm. I set cut-off value to 0.2 nm for g_clusters command. Is it a appropriate value?Sincerely.On Tuesday, September 30, 2014 2:17 PM, Justin Lemkul wrote:  

Re: [gmx-users] Fw: minimization for final configuration

2014-09-30 Thread Justin Lemkul
On 9/30/14 9:58 AM, Mahboobeh Eslami wrote: dear Justin thanks for your reply The plot of the RMSD against time for the trajectory generated with g_rms shows a maximum RMSD about 0.195 nm. I set cut-off value to 0.2 nm for g_clusters command. Is it a appropriate value? g_rms and g_cluster do