Re: [gmx-users] Help Energy Diferences

2014-07-23 Thread Mark Abraham
... and stop using 5.0-rc1! Mark On Tue, Jul 22, 2014 at 1:17 AM, Justin Lemkul jalem...@vt.edu wrote: On 7/21/14, 1:30 PM, ANDRES ADOLFO ORTEGA GUERRERO wrote: Hi Dear Gromacs Users, I have been dealing with a problem, i run an MD of my sistem , and i see problems with my energies due

[gmx-users] Help Energy Diferences

2014-07-21 Thread ANDRES ADOLFO ORTEGA GUERRERO
Hi Dear Gromacs Users, I have been dealing with a problem, i run an MD of my sistem , and i see problems with my energies due to one of my molecules is a CNT and has no charges and its Coul SR are huge, well i though this could be of an error in my NDX file , the thing is that i run my MD in my

Re: [gmx-users] Help Energy Diferences

2014-07-21 Thread ANDRES ADOLFO ORTEGA GUERRERO
Hi i run again the MD, but wtih MD mdrun -nb cpu, in order to check , and the energy make sense now, how can i get the correct use of Gromacs with GPU? i compile it with cuda, and the program recognize the GPU -- Gromacs Users mailing list * Please search the archive at